An automated calculation pipeline for differential pair interaction energies with molecular force fields using the Tinker Molecular Modeling Package

  • An automated pipeline for comprehensive calculation of intermolecular interaction energies based on molecular force-fields using the Tinker molecular modelling package is presented. Starting with non-optimized chemically intuitive monomer structures, the pipeline allows the approximation of global minimum energy monomers and dimers, configuration sampling for various monomer–monomer distances, estimation of coordination numbers by molecular dynamics simulations, and the evaluation of differential pair interaction energies. The latter are used to derive Flory–Huggins parameters and isotropic particle–particle repulsions for Dissipative Particle Dynamics (DPD). The computational results for force fields MM3, MMFF94, OPLS-AA and AMOEBA09 are analyzed with Density Functional Theory (DFT) calculations and DPD simulations for a mixture of the non-ionic polyoxyethylene alkyl ether surfactant C10E4 with water to demonstrate the usefulness of the approach.

Export metadata

Metadaten
Author:Felix Bänsch, Mirco Daniel, Harald Lanig, Christoph Steinbeck, Achim Zielesny
DOI:https://doi.org/10.1186/s13321-024-00890-5
Parent Title (German):Journal of Cheminformatics
Document Type:Article
Language:English
Date of Publication (online):2024/08/08
Date of first Publication:2024/08/08
Publishing Institution:Westfälische Hochschule Gelsenkirchen Bocholt Recklinghausen
Release Date:2024/11/21
Tag:Intermolecular interaction; Molecular Dynamics; Molecular Force Field; Molecular modeling; Nonbonding interaction
Volume:16 (2024)
Issue:Artikel Nr. 96
Pagenumber:19 Seiten
Departments / faculties:Institute / Institut für biologische und chemische Informatik
Licence (German):License LogoEs gilt das Urheberrechtsgesetz

$Rev: 13159 $