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Recent years have seen a sharp increase in the development of deep learning and artificial intelligence-based molecular informatics. There has been a growing interest in applying deep learning to several subfields, including the digital transformation of synthetic chemistry, extraction of chemical information from the scientific literature, and AI in natural product-based drug discovery. The application of AI to molecular informatics is still constrained by the fact that most of the data used for training and testing deep learning models are not available as FAIR and open data. As open science practices continue to grow in popularity, initiatives which support FAIR and open data as well as open-source software have emerged. It is becoming increasingly important for researchers in the field of molecular informatics to embrace open science and to submit data and software in open repositories. With the advent of open-source deep learning frameworks and cloud computing platforms, academic researchers are now able to deploy and test their own deep learning models with ease. With the development of new and faster hardware for deep learning and the increasing number of initiatives towards digital research data management infrastructures, as well as a culture promoting open data, open source, and open science, AI-driven molecular informatics will continue to grow. This review examines the current state of open data and open algorithms in molecular informatics, as well as ways in which they could be improved in future.
The influence of molecular fragmentation and parameter settings on a mesoscopic dissipative particle dynamics (DPD) simulation of lamellar bilayer formation for a C10E4/water mixture is studied. A “bottom-up” decomposition of C10E4 into the smallest fragment molecules (particles) that satisfy chemical intuition leads to convincing simulation results which agree with experimental findings for bilayer formation and thickness. For integration of the equations of motion Shardlow’s S1 scheme proves to be a favorable choice with best overall performance. Increasing the integration time steps above the common setting of 0.04 DPD units leads to increasingly unphysical temperature drifts, but also to increasingly rapid formation of bilayer superstructures without significantly distorted particle distributions up to an integration time step of 0.12. A scaling of the mutual particle–particle repulsions that guide the dynamics has negligible influence within a considerable range of values but exhibits apparent lower thresholds beyond which a simulation fails. Repulsion parameter scaling and molecular particle decomposition show a mutual dependence. For mapping of concentrations to molecule numbers in the simulation box particle volume scaling should be taken into account. A repulsion parameter morphing investigation suggests to not overstretch repulsion parameter accuracy considerations.
Developing and implementing computational algorithms for the extraction of specific substructures from molecular graphs (in silico molecule fragmentation) is an iterative process. It involves repeated sequences of implementing a rule set, applying it to relevant structural data, checking the results, and adjusting the rules. This requires a computational workflow with data import, fragmentation algorithm integration, and result visualisation. The described workflow is normally unavailable for a new algorithm and must be set up individually. This work presents an open Java rich client Graphical User Interface (GUI) application to support the development of new in silico molecule fragmentation algorithms and make them readily available upon release. The MORTAR (MOlecule fRagmenTAtion fRamework) application visualises fragmentation results of a set of molecules in various ways and provides basic analysis features. Fragmentation algorithms can be integrated and developed within MORTAR by using a specific wrapper class. In addition, fragmentation pipelines with any combination of the available fragmentation methods can be executed. Upon release, three fragmentation algorithms are already integrated: ErtlFunctionalGroupsFinder, Sugar Removal Utility, and Scaffold Generator. These algorithms, as well as all cheminformatics functionalities in MORTAR, are implemented based on the Chemistry Development Kit (CDK).
Zentrale Raumlufttechnische Anlagen (RLT-Anlagen) sind für Betriebszeiten von fünfzehn und mehr Jahren konzipiert. Nicht selten werden die Geräte auch nach 25 Jahren Dank Retrofit weiterbetrieben. Unberücksichtigt bleibt dabei, ob die zukünftigen, klimatischen Bedingungen noch der Auslegung entsprechen. Zur Überprüfung der klimatischen Änderungen können sogenannte Testreferenzjahre (TRY – Test Reference Year) genutzt werden. Diese basieren für die heutige Auslegung auf den lokalen, stündlichen Wetterbedingungen im Bezugsjahr 2012 und zusätzlich auf modellbasierten Wetterdaten für das Bezugsjahr 2045.
Das Zentralluftgerät einer Krankenhaus-Intensivstation wurde für die 15 Wetter¬stationen der VDI 4710, Blatt 3 in Deutschland auf die Leistungsanforderungen von heute und für das Jahr 2045 untersucht. Zusätzlich wurden für den Standort Berlin die aktuellen Wetteraufzeichnungen im Sommer 2020 betrachtet. Daraus lassen sich Rückschlüsse ziehen, wie sich städtische Wärmeinseln (UHI – Urban Heat Islands) zukünftig auf den Energie- und Leistungsbedarf zur Gebäudeklimatisierung auswirken werden.
Die Auswirkungen auf die Wärme- und Kältespitzenleistung sowie der kumulierte Energiebedarf werden genauso analysiert wie der Befeuchtungsbedarf. Hieraus lassen sich die potenziellen Leistungsreserven abschätzen und die Klimaresilienz der Anlagentechnik bewerten.
